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Peter Oledzki obtained his PhD in 2006 from the University of Leeds. He worked in the Structural Bioinformatics group of Dr. Richard Jackson on developing a protein-ligand docking algorithm. During this time he also collaborated with Prof. Adam Nelson and worked on the comparison of ATP binding sites of protein kinases using conformationally diverse bisindolylmaleimides.
After his PhD he joined BioSolveIT GmbH and has been working there for 2 years as an application scientist. He has been involved with the development of FlexX 3.0 and various different application studies with BioSolveIT tools. He is also a former winner of the business planning competition Bioscience YES (Young Entrepreneurs Scheme).
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De Novo Scaffold Placing and Virtual Screening
Peter Oledzki, BioSolveIT GmbH
The workshop will be a combination of using FlexX 3.0 protein-ligand docking and a new ligand-based scaffold replacement tool, Recore. Each user will follow a structured interactive demonstration of the new FlexX-GUI and Recore to first gain familiarity on how to use each individual tool. Recore will be utilised to show how easy scaffold replacement can be performed on a variety of known active compounds using a sandbox fragment space. The workshop will continue with users performing docking studies with FlexX. The pitfalls users need to be aware of in docking protocol preparation will be highlighted and users will then proceed to perform various docking studies using further examples provided.
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